Carlsberg Foundation post-doctoral fellowship, 2011-2013  

Young Investigator of the Year, Medical School, University of Copenhagen, 2009  

Lundbeck Foundation post-doctoral fellowship, 2008-2011 

Priyadarshini, M., Ni, J.Z., Vargas-Velazquez, A.M., Gu, S.G., & Frøkjær-Jensen, C*. "Reprogramming the piRNA pathway for multiplexed and transgenerational gene silencing in C. elegans." Nature Methods 19, no. 2 (2022): 187-194. 

Frøkjær-Jensen, C. et al. "An Abundant Class of Non-coding DNA Can Prevent Stochastic Gene Silencing in the C. elegans Germline." Cell 166, no. 2 (2016): 343-357. 

Frøkjær-Jensen, C. et al. "Random and targeted transgene insertion in Caenorhabditis elegans using a modified Mos1 transposon." Nature Methods 11, no. 5 (2014): 529-534. 

Frøkjær-Jensen, C. et al. "Single-copy insertion of transgenes in Caenorhabditis elegans." Nature Genetics 40, no. 11 (2008): 1375-1383. 

Chang, S., Johnston, R.J., Frøkjær-Jensen, C., Lockery, S., & Hobert, O. "MicroRNAs act sequentially and asymmetrically to control chemosensory laterality in the nematode." Nature 430, no. 7001 (2004): 785-789.